Preheat oven to 350 degrees.
In a large bowl, combine flours, baking soda and salt. Stir until combined.
In a separate medium-sized bowl, scramble too eggs with a fork.
Using the back of a fork, mash bananas until smooth without chunks. Add to egg mixture.
Add applesauce, honey, vanilla to the egg and banana mixture. Mix well.
Combine wet and dry ingredients in the larger bowl. Stir until combined with no lumps.
Using a spoon, portion batter into mini muffin tins. Sprinkle mini chocolate chips on the tops.
Bake for 11-13 minutes, or until when you insert a toothpick no raw batter clings to the toothpick and the toothpick comes out clean. (avoiding melty chocolate chips with this test.)
This recipe makes roughly 36 mini muffins if little hands aren't grabbing them as they come straight out of the oven! :)